So you have painted two data sets and loaded another one from a file, and now you are testing predictions of logistic regression, classification trees and SVM on it? Tired of having to reconnect the Paint data widget and the File widget back and forth whenever you switch between them?
Say no more! Look no further! Here is the new Hub widget!
Hub widget is themost versatile widget available so far. It accepts several inputs of any type and outputs them to as many other widgets as you want.
The Hub widget treats all types with the strictest equality.
The Hub widget works like charm and is like the amazing cast-to-void-and-back-to-anything idiom in C. This strongful MacGyver of widgets can (almost) convert classification tree into data, or preprocessor into experimental results without ever touching the data. With its amazing capabilities, the Hub widget has the potential to cause an even greater havoc in your workflows than the famous Merge data widget.
As you might know, Orange comes with several basic widget sets pre-installed. These allow you to upload and explore the data, visualize them, learn from them and make predictions. However, there are also some exciting add-ons available for installation. One of these is a bioinformatics add-on, which is our specialty.
Bioinformatics widget set allows you to pursue complex analysis of gene expression by providing access to several external libraries. There are four widgets intended specifically for this – dictyExpress, GEO Data Sets, PIPAx and GenExpress. GEO Data Sets are sourced from NCBI, PIPAx and dictyExpress from two Biolab projects, and finally GenExpress from Genialis. A lot of the data is freely accessible, while you will need a user account for the rest.
Once you open the widget, select the experiments you wish to use for your analysis and view it in the Data Table widget. You can compare these experiments in Data Profiles, visualize them in Volcano Plot, select the most relevant genes in Differential Expression widget and much more.
These databases enable you to start your research just by installing the bioinformatics add-on (Orange → Options → Add-ons…). The great thing is you can easily combine bioinformatics widgets with the basic pre-installed ones. What an easy way to immerse yourself in the exciting world of bioinformatics!